If you’ve wanted to get on the bread making bandwagon but think it’s too much work (and not enough protein for your eating habits), then these high protein bagel bites are your new best friend!!

Okay, listen. There are bagels… and then there are bagel bites. Not the sad frozen ones you nuked in the microwave as a teenager (ughhh, we don’t talk about those).Nope…not at all!! I’m talking about soft, chewy, perfectly portioned mini bagels you can pop into your mouth without needing a stretchy waistband. And these ones? They’re secretly high in protein thanks to almond flour and a few extra sneaky boosts.

So, let’s do this. Because snack time deserves a glow-up.

Ingredients You’ll Need

Here’s the beauty of these high protein bagel bites: no yeast, no boiling, no 3-hour dough nap. Just stir, scoop, bake, devour. Unlike my regular high protein bagels, these have the addition of extra protein and are gluten free!

For the bagel base:

• almond flour (protein-packed + gluten-free superstar)
• coconut flour (helps with structure and chew)
• baking powder
• salt
• everything bagel seasoning (optional, but who are we kidding… it’s not optional)
• large eggs (protein heroes + hold everything together)
• Greek yogurt (high protein binder, makes them soft)

For extra protein oomph (optional, but highly encouraged):

• 2 tbsp unflavored whey protein powder or collagen powder
• OR 2 tbsp hemp hearts (for the plant-based squad)

Egg wash (so they get that glossy bakery glow):

• 1 egg, beaten
• Extra everything bagel seasoning, sesame seeds, or poppy seeds for topping

How to Make High Protein Bagel Bites

1. Mix the dry stuff. In a medium bowl, whisk almond flour, coconut flour, baking powder, salt, and (if you’re fancy – because who doesn’t want to be fancier!!) a spoonful of protein powder.
2. Add the wet stuff. Stir in the eggs and Greek yogurt until it forms a sticky dough. Don’t panic—it’ll look a little like cookie dough. That’s what we want.
3. Scoop + roll. Use a tablespoon or cookie scoop to portion out dough balls. Roll lightly between your palms. If they’re sticky, dust your hands with almond flour.
4. Shape (or not). If you’re a purist, poke a hole in the middle to make them mini bagels. If you’re lazy (hi, same), leave them as balls and call them “bagel bites.”
5. Brush + sprinkle. Place them on a parchment-lined baking sheet, brush with egg wash, and sprinkle with seasoning.
6. Bake. Into a 375°F oven for 18–22 minutes until golden, puffy, and slightly firm to the touch.
7. Cool just enough not to scorch your tongue. Then eat. Obviously.

Substitutions (Because Life is Flexible)

• Dairy-Free: Swap Greek yogurt with a thick dairy-free yogurt (like coconut or almond-based). Bonus points if it’s fortified with pea protein.
• Egg-Free: Try flax eggs (1 tbsp ground flax + 3 tbsp water per egg). Texture will be slightly denser, but it works.
• Nut-Free: If almond flour isn’t your jam, use sunflower seed flour (just know it might turn slightly green because of natural reactions with baking soda—don’t freak out, it’s edible) or lupin flour made from roasted lupini!
• Low Carb / Keto Hardcore: Stick with almond flour and ditch the coconut flour for a touch more almond.

Fun Add-Ins + Flavor Twists

Okay, here’s where you can let your bagel freak flag fly:

• Cheddar Jalapeño: Add ½ cup shredded cheddar + diced jalapeños to the dough. Boom. Snack attack.
• Garlic Parmesan: Mix in ½ tsp garlic powder and sprinkle with parmesan before baking.
• Sweet Tooth Version: Skip the salt + seasoning, add 1 tsp cinnamon + 1 tbsp sweetener (like monk fruit or honey), and top with a little cinnamon sugar. Instant mini cinnamon bagels.
• Protein Bomb: Stir in diced cooked turkey bacon, smoked salmon bits, or even pepperoni. Snack plate heaven.

Honestly, these add-ins and substitutions are the bomb!! Once you wrap your head around how easy these high protein bagel bites are to make, you can even enlist the help of your kids (nothing like teaching them how to feed themselves!!). Trust me when I tell you that they will love having their creative juices flow in the kitchen…and the bonus is that they will feel empowered when they know they can make their own food! Aaaand, they will most likely tell their friends!! I think that is definitely a win-win!!

How to Store + Freeze Them

Let’s be real—these little guys disappear quickly. But in the off-chance you show self-control:

• Counter: Store in an airtight container for up to 2 days.
• Fridge: They last about 5–6 days in the fridge. Warm them in the toaster oven for that just-baked vibe.
• Freezer: Cool completely, then toss in a freezer bag. Freeze up to 3 months. To reheat: microwave 20–30 seconds or toast straight from frozen.

Pro tip: Make a double batch of these high protein bagel bites because “future you” will thank “past you” when hunger strikes at 3pm.

Serving Suggestions

• Mini Breakfast Sandwiches: Slice in half, stuff with scrambled eggs + turkey sausage = meal prep gold.
• Snack Plate Star: Pair with hummus, guac, or Greek yogurt dip.
• Kid-Friendly Lunchbox Win: Pop 2–3 into a lunchbox with cheese cubes and apple slices.
• Grown-Up Happy Hour: Serve warm with a schmear of herbed cream cheese and smoked salmon. Martini optional (but encouraged).
• Sweet Hack: Spread with almond butter + drizzle with honey. Chef’s kiss.

If You Love These High Protein Bagel bites, You’ll Love These Other Recipes:

• High Protein Seeded Cottage Cheese Bread
• 2 Reasons to Eat This Healthy High Protein Cottage Cheese Bread
• Irish Soda Bread…Just Crumbs Style
• High Protein Chickpea Pancakes
• Easy 3 Ingredient High Protein Bagel

Why You’ll Love These High Protein Bagel Bites (and Probably Brag About Them)

They’re:
✅ Gluten-free and grain-free
✅ Protein-packed (so they actually keep you full)
✅ Freezer-friendly (aka meal prep BFFs)
✅ Versatile enough to go savory OR sweet
✅ Cute. Like, really cute.

Honestly? These high protein bagel bites are the snack you didn’t know you needed. They’re basically bite-sized hugs with extra nutrients. And if anyone gives you side-eye for eating six at once, just remind them: protein builds muscle. You’re basically working out.

So there you have it guys! These little nuggets will not only save the day when you’re hankering for a quick snack, but also provide a tummy-filling bite for your whole family! Life’s too short for boring snacks. Make these high protein bagel bites, play around with flavors, and stash some in your freezer so snack emergencies never catch you off guard.

High Protein Bagel Bites

Make a batch of these good-for-you bites that the kids will love and that will fill everyone’s tummy with high protein and high fibre goodness!

Print Recipe Pin Recipe

Course bread

Cuisine American

Ingredients

  

Bagel:

• 2 cups almond flour
• 2 tbsp coconut flour
• 2 tsp baking powder
• ½ tsp salt
• 2 tsp everything bagel seasoning
• 2 large eggs
• 1 cup plain Greek yogurt
• 2 tbsp hemp hearts optional
• 1 tbsp collagen/protein powder optional

For Wash:

• 1 large egg, beaten
• 2-3 tbsp Everything But The Bagel Spice or whatever floats your boat!!

Instructions

 

• In a medium bowl, whisk almond flour, coconut flour, baking powder, salt, and (if you’re fancy – because who doesn’t want to be fancier!!) a spoonful of protein powder.
• Stir in the eggs and Greek yogurt until it forms a sticky dough. Don’t panic—it’ll look a little like cookie dough. That’s what we want.
• Use a tablespoon or cookie scoop to portion out dough balls. Roll lightly between your palms. If they’re sticky, dust your hands with flour (almond flour if you’re keeping it gluten free).
• If you’re a purist, poke a hole in the middle to make them mini bagels. If you’re lazy (hi, same), leave them as balls and call them “bagel bites.”
• Place them on a parchment-lined baking sheet, brush with egg wash, and sprinkle with seasoning.
• Bake. Into a 375°F oven for 18–22 minutes until golden, puffy, and slightly firm to the touch.
• Cool – if you have the willpower!!

Keyword high protein